MmuEX6030131 @ mm10
Exon Skipping
Gene
ENSMUSG00000058248 | Kcnh1
Description
potassium voltage-gated channel, subfamily H (eag-related), member 1 [Source:MGI Symbol;Acc:MGI:1341721]
Coordinates
chr1:192224845-192242037:+
Coord C1 exon
chr1:192224845-192224951
Coord A exon
chr1:192238725-192238853
Coord C2 exon
chr1:192241919-192242037
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCCTTTGATATTCCTTTCAGGGA
3' ss Score
10.16
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TTTTATGTATGGAGAGCTGACTGACAAGGACACAGTTGAAAAGGTTCGCCAGACCTTTGAGAACTACGAGATGAATTCCTTCGAAATTCTGATGTACAAGAAGAACA
Seq A exon
GGACACCTGTGTGGTTTTTTGTGAAGATCGCTCCGATCAGGAACGAACAGGATAAAGTGGTCCTGTTCCTTTGCACTTTCAGCGACATAACTGCATTCAAGCAGCCCATCGAGGACGACTCCTGCAAAG
Seq C2 exon
GTTGGGGGAAGTTTGCCCGACTGACCAGAGCTCTGACAAGCAGCAGGGGAGTCCTGCAGCAGCTGGCCCCCAGTGTACAGAAGGGTGAGAATGTTCACAAGCACTCGCGCCTGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058248-'4-6,'4-4,6-6=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=FE(34.0=100)
A:
PF134261=PAS_9=PD(29.2=70.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGTATGGAGAGCTGACTGACA
R:
CAGGCGCGAGTGCTTGTG
Band lengths:
218-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types