RnoEX0046016 @ rn6
Exon Skipping
Gene
ENSRNOG00000003841 | Kcnh1
Description
potassium voltage-gated channel subfamily H member 1 [Source:RGD Symbol;Acc:68398]
Coordinates
chr13:110950923-111009965:+
Coord C1 exon
chr13:110950923-110951029
Coord A exon
chr13:110973413-110973541
Coord C2 exon
chr13:111009573-111009965
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCTTTTGCTGTTCCTTTCAGGGA
3' ss Score
11.56
5' ss Seq
AAGGTTCGT
5' ss Score
8.44
Exon sequences
Seq C1 exon
TTTTATGTATGGAGAGCTGACCGACAAGGACACGGTTGAAAAGGTTCGCCAGACCTTTGAGAACTACGAGATGAACTCCTTCGAAATTCTGATGTACAAGAAGAACA
Seq A exon
GGACACCTGTGTGGTTTTTTGTGAAGATCGCTCCAATCAGGAACGAACAGGATAAAGTGGTTCTGTTCCTTTGCACTTTCAGTGACATAACGGCATTCAAGCAGCCCATTGAGGACGACTCCTGCAAAG
Seq C2 exon
GTCCTGCAGCTGGGTTCAGACATCCTCCCCCAGTACAAGCAAGAGGCGCCAAAGACACCCCCTCACATCATCCTACACTACTGTGTCTTTAAGACCACATGGGATTGGATCATCTTGATCCTGACCTTCTACACAGCCATCCTGGTCCCTTACAACGTCTCCTTTAAAACCAGGCAGAATAACGTGGCCTGGCTGGTGGTGGACAGCATCGTGGATGTCATCTTTTTGGTGGACATTGTCTTGAATTTTCACACCACCTTTGTCGGGCCAGCGGGGGAAGTGATCTCTGACCCCAAACTTATCCGCATGAACTACCTGAAGACGTGGTTTGTGATCGACCTTCTCTCCTGTTTGCCATATGACGTCATCAACGCTTTTGAGAACGTGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003841_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=FE(34.0=100)
A:
PF134261=PAS_9=PD(29.2=70.5)
C2:
PF0052026=Ion_trans=PU(29.5=49.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACAAGGACACGGTTGAAA
R:
TTGTAAGGGACCAGGATGGCT
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]