GgaEX6041733 @ galGal3
Exon Skipping
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6916927-6919810:-
Coord C1 exon
chr7:6919701-6919810
Coord A exon
chr7:6919482-6919562
Coord C2 exon
chr7:6916927-6917050
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTCAATCCATCTTTTTCAGTTC
3' ss Score
8.28
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATGTTGGTCCTGCCTCAATGATAGTGGGAAACCTTGTTGCTGGAAAGAGAATTGCACAAGCCTCAGGGAGAGATGTTACCCAGCTGGAGGATAACGATCAGGCAAGAAAG
Seq A exon
TTCCTGTATTTAGCAGATGTTCTTCAGTGGCGAGCTCAGACAACTCCAGATCATCCCCTCTTCCTGTTGTTAAATTCCAAG
Seq C2 exon
GGCACTGTAGCTAGCGCTGCATCGTGCATGCAGTTGCACAAGAGAGCAGAGAGAGTGGCAGTTGCACTAATGGAGAAGGGACGACTGAATGTTGGTGACCATGTAGCCCTGGTTTATCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228-'38-41,'38-40,39-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(4.0=70.4)
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGCACAAGCCTCAGGGAG
R:
CAGGGCTACATGGTCACCAAC
Band lengths:
172-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]