MmuEX6049163 @ mm9
Exon Skipping
Gene
ENSMUSG00000020231 | Dip2a
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:75741233-75742711:-
Coord C1 exon
chr10:75742602-75742711
Coord A exon
chr10:75742451-75742531
Coord C2 exon
chr10:75741233-75741356
Length
81 bp
Sequences
Splice sites
3' ss Seq
AGGCTCCTCTCTCTGCACAGTTC
3' ss Score
7.83
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AAGTTGGACCAGCCTCGATGATTGTTGGGAACCTGGTTGCTGGAAAAAGGATCGCACAGGCCTCTGGGAGAGAGCTGGCCCACCTGGAGGACAGCGACCAGGCTCGCAAG
Seq A exon
TTCCTGTTCCTGGCAGACGTGCTGCAGTGGCGGGCTCACACCACTCCTGACCACCCTCTGTTCCTGCTGCTGAATGCTAAG
Seq C2 exon
GGCACGGTCACCAGCACTGCAACCTGTATCCAGCTGCACAAAAGGGCTGAGAGAGTGGCTGCCGCTCTGATGGAGAAGGGGCGGCTAGATGCTGGGGACCATGTGGCTTTGGTGTACCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231-'28-32,'28-31,29-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(4.0=70.4)
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGGACCAGCCTCGATGAT
R:
GCCACTCTCTCAGCCCTTTTG
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: