BtaEX6004235 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011495 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr1:147955840-147959645:+
Coord C1 exon
chr1:147955840-147955949
Coord A exon
chr1:147956148-147956228
Coord C2 exon
chr1:147959522-147959645
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTGCCCCTCCCACAGTTC
3' ss Score
10.18
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AGGTTGGGCCTGCCTCCATGATCGTTGGGAACCTGGTCGCCGGGAAGAGAATCGCTCAGGCCTCAGGGAGGGAGTTGTCGCACCTAGAGGACAGTGAGCAGGCTAGGAAG
Seq A exon
TTCTTGTTCCTGCCTGACGTGCTGCAGTGGCGGGCCCACACCACCCCCGAACACCCGCTGTTCTTGCTGCTCAATGCCAAG
Seq C2 exon
GGCACAGTCACCAGCACCGCAACCTGCGTCCAGCTCCACAAAAAGGCCGAGCGAGTGGCCGCTGCTCTGATGGAGAAGGCAAGGCTGAGTGCCGGGGCCCATGTGGCCCTGGTCTACCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011495-'27-37,'27-36,28-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(4.0=70.4)
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCATGATCGTTGGGAAC
R:
CCTTGCCTTCTCCATCAGAGC
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]