MmuEX6049163 @ mm10
Exon Skipping
Gene
ENSMUSG00000020231 | Dip2a
Description
disco interacting protein 2 homolog A [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:76278488-76279966:-
Coord C1 exon
chr10:76279857-76279966
Coord A exon
chr10:76279706-76279786
Coord C2 exon
chr10:76278488-76278611
Length
81 bp
Sequences
Splice sites
3' ss Seq
AGGCTCCTCTCTCTGCACAGTTC
3' ss Score
7.83
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AAGTTGGACCAGCCTCGATGATTGTTGGGAACCTGGTTGCTGGAAAAAGGATCGCACAGGCCTCTGGGAGAGAGCTGGCCCACCTGGAGGACAGCGACCAGGCTCGCAAG
Seq A exon
TTCCTGTTCCTGGCAGACGTGCTGCAGTGGCGGGCTCACACCACTCCTGACCACCCTCTGTTCCTGCTGCTGAATGCTAAG
Seq C2 exon
GGCACGGTCACCAGCACTGCAACCTGTATCCAGCTGCACAAAAGGGCTGAGAGAGTGGCTGCCGCTCTGATGGAGAAGGGGCGGCTAGATGCTGGGGACCATGTGGCTTTGGTGTACCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231-'41-49,'41-46,42-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(4.0=70.4)
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGGACCAGCCTCGATGAT
R:
GCCACTCTCTCAGCCCTTTTG
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types