HsaEX0019729 @ hg38
Exon Skipping
Gene
ENSG00000160305 | DIP2A
Description
disco interacting protein 2 homolog A [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr21:46551634-46554292:+
Coord C1 exon
chr21:46551634-46551743
Coord A exon
chr21:46551824-46551904
Coord C2 exon
chr21:46554169-46554292
Length
81 bp
Sequences
Splice sites
3' ss Seq
CAAGTCGCCCTCTCGTGCAGTTC
3' ss Score
6.15
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AGGTTGGACCAGCCTCAATGATCGTGGGGAACCTGGTTGCTGGGAAGAGAATCGCTCAGGCTTCCGGGAGAGAGCTCGCCCACCTGGAGGACAGCGACCAGGCACGGAAG
Seq A exon
TTCCTGTTCCTGGCTGACGTGCTGCAGTGGCGTGCCCACACCACTCCTGACCACCCGCTGTTCTTGCTGCTGAACGCCAAG
Seq C2 exon
GGCACCGTCACAAGCACTGCAACCTGTGTCCAGCTGCACAAAAGGGCTGAGAGAGTGGCCGCGGCTCTGATGGAGAAGGGAAGACTGAGTGTTGGGGACCATGTGGCTCTGGTCTACCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305-'63-65,'63-59,64-65
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(10.7=70.4)
C2:
PF0050123=AMP-binding=FE(23.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTGGTTGCTGGGAAGAG
R:
TGGTCCCCAACACTCAGTCTT
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development