DreEX0026999 @ danRer10
Exon Skipping
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:599651-601037:-
Coord C1 exon
chr9:600937-601037
Coord A exon
chr9:600018-600098
Coord C2 exon
chr9:599651-599774
Length
81 bp
Sequences
Splice sites
3' ss Seq
GCGTGTGTGTGTGTGTGTAGTTT
3' ss Score
6.49
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
AGGTGGGTCCGGCTTCTATGATCGTGGGAAACCTGGTGGCAGGAAAGAGGATTGCACAGGCCTGTGGCAGAGACGTGACCCAGCTGGAGGACCACGACCAG
Seq A exon
TTTCTGTATCTTCAGGATGTCCTGCAGTGGAGAGCTCAGGCCACGCCAGATCACCCTCTGTTCCTGCTGCTCAACTCTAAG
Seq C2 exon
GGCACTGTGGTCAACACTGCGTCCTGTGTGCAGCTGCACAAGCGTGCGGAGCGTGTGGCGTTAGCGCTGATGGAGAGAGGACGACTGAACGCTGGAGATCACGTAGCACTGCTGTATCCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(4.0=70.4)
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGGAAAGAGGATTGCACA
R:
CGTGATCTCCAGCGTTCAGTC
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]