GgaEX6042281 @ galGal3
Exon Skipping
Gene
ENSGALG00000009357 | RAPGEF4
Description
NA
Coordinates
chr7:18921993-18933272:-
Coord C1 exon
chr7:18933148-18933272
Coord A exon
chr7:18923178-18923320
Coord C2 exon
chr7:18921993-18922081
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTGTTGTCTTGCAGACC
3' ss Score
12.54
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
GGGAGGGGGGAGCCGCCGCCGCCACCAGCCGGGTGTGCGGCGACCTCATCCCTGTCCAACATGGTCGCCGCTCACACCTCCCATTCCGCGTCCTCTGGCGAGTGGATCGCGTGCCTGGATAAAAG
Seq A exon
ACCTTTGGAACGTTCCAGTGAAGATGTAGATATAATATTTACACGACTGAAAGAAGTGAAAGCCTTTGAGAAATTTCATCCAAACCTTCTCCAGCAGATATGTCTGTGTGGATATTATGAAAACCTGGAAAAAGGGATCACAT
Seq C2 exon
TATTCCGTCAGGGTGATATTGGGTCAAACTGGTATGCTGTTCTGACAGGATCGCTGGATGTGAAGGTTTCTGATACAAGCAACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009357-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0002724=cNMP_binding=PU(9.8=18.4)
C2:
PF0002724=cNMP_binding=FE(31.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCGGCGACCTCATC
R:
GGTGGTTGCTTGTATCAGAAACC
Band lengths:
180-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]