RnoEX0074036 @ rn6
Exon Skipping
Gene
ENSRNOG00000001516 | Rapgef4
Description
Rap guanine nucleotide exchange factor 4 [Source:RGD Symbol;Acc:621886]
Coordinates
chr3:58632476-58693027:+
Coord C1 exon
chr3:58632476-58632540
Coord A exon
chr3:58689630-58689772
Coord C2 exon
chr3:58692939-58693027
Length
143 bp
Sequences
Splice sites
3' ss Seq
GCCCTTTCTCCCCACTGCAGGCC
3' ss Score
10.84
5' ss Seq
CACGTAAGG
5' ss Score
7.47
Exon sequences
Seq C1 exon
ATGGTTGCTGCGCACGCTGCACACTCTCCGTCCTCGGCCGAGTGGATCGCCTGCCTGGATAAAAG
Seq A exon
GCCGTTGGAGCGATCTAGTGAAGATGTGGACATAATTTTCACGCGGCTGAAAGGAGTTAAAGCTTTTGAGAGATTTCACCCAAACCTCCTTCGTCAGATTTGTTTATGCAGTTACTATGAGAACCTGGAGAAAGGAATCACAC
Seq C2 exon
TGTTTCGACAAGGGGACATTGGAACCAACTGGTATGCTGTCCTAGCTGGGTCTTTGGATGTTAAAGTGTCTGAGACCAGCAGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001516-'0-4,'0-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0002724=cNMP_binding=PU(9.8=18.4)
C2:
PF0002724=cNMP_binding=FE(31.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACACTCTCCGTCCTCG
R:
CTGGTGACTGCTGGTCTCAGA
Band lengths:
138-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]