DreEX6034767 @ danRer10
Exon Skipping
Gene
ENSDARG00000079872 | rapgef4
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:ZFIN;Acc:ZDB-GENE-070912-385]
Coordinates
chr9:3019418-3028105:-
Coord C1 exon
chr9:3027962-3028105
Coord A exon
chr9:3020395-3020537
Coord C2 exon
chr9:3019418-3019506
Length
143 bp
Sequences
Splice sites
3' ss Seq
ATGTGTGTGTGTGTTTGTAGACC
3' ss Score
9.12
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
Exon sequences
Seq C1 exon
CTCAGTGAACTCACATCTGCTCAGGATCTGCTGCAGACGATGTTTACTGTGATTTTACTCCATGATTTCACCGAAGATGGTCGCGGCACACACCTCCAGCCACCCGTCTGCATCTGCTGACTGGATCGTCTGTCTGGATAAGAG
Seq A exon
ACCAGAGGAGCGTTCAGGGGAAGACGTGGACATAATCATGGTGCGTCTGAAAAGTGTGAAGGCCTTCGAGAAGTTCCACCCACCTCTTCTTCAGCAGATCTGTCTGTGCGGCTTTTATGAATGTCTGGAGAAAGGCATCACTC
Seq C2 exon
TGTACAGGCAGGGTGACATCGGCACTAACTGGTACACCGTCCTGTCCGGTTCTCTAGACGTCAAAGTCTCCGAAACAGCAAACCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079872-'0-2,'0-1,1-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0002724=cNMP_binding=PU(9.8=18.4)
C2:
PF0002724=cNMP_binding=FE(31.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACTCACATCTGCTCAGGA
R:
ATGGTTTGCTGTTTCGGAGACT
Band lengths:
226-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]