DmeEX0004287 @ dm6
Exon Skipping
Gene
FBgn0085421 | Epac
Description
The gene Exchange protein directly activated by cAMP is referred to in FlyBase by the symbol DmelEpac (CG34392, FBgn0085421). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (4 unique). Gene sequence location is 2R:6759715..6798941. Its molecular function is described by: guanyl-nucleotide exchange factor activity. It is involved in the biological process described with: regulation of Rap protein signal transduction. 20 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: fertile; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of very low expression. Peak expression observed within 12-18 embryonic stages, at stages throughout the pupal period.
Coordinates
chr2R:6765536-6767195:-
Coord C1 exon
chr2R:6767051-6767195
Coord A exon
chr2R:6765935-6766111
Coord C2 exon
chr2R:6765536-6765697
Length
177 bp
Sequences
Splice sites
3' ss Seq
CCCCGACCTTCTTCCCGCAGAGC
3' ss Score
12.01
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
TATTCAATCAAGGCGACGAAGGACGCTCCTGGTACATCTTACTCAAGGGATCGGTAGACGTTGTGATACACGGCAAGGGAACTGTTGCCACTCTGAAGACTGGGGATGATTTCGGGAAACTGGCCTTGATAAACGACGCACCCAG
Seq A exon
AGCTGCTACCATCGTACTGAAGGAGAACAATTGCCACTTGCTGCGCGTGGACAAGGAACACTTCAACCGGATACTGCGCGATGTGGAGGCCAATACTCTGAGATTGCAGGAGCACGGCAAGGATGTTTTAGTGCTCGAGCGCGTGGCTAAGCAACGTGGACAGCATTCGGCATTTAA
Seq C2 exon
ATATACGGTGATGTCGGGAACTCCGGCCAAGATGCTGGAGCACCTGCTGGAGACGCGACTGGGCCAGTCCGTGGGTGGAATGGATCCGTTCTTGGACGACTTCCTGCTCACACACATCGTTTTCATGCCCGTCGTTCAGCTGGTTGATGAATTGGCCAATTA
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0085421-'22-18,'22-17,23-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=FE(55.2=100)
A:
PF0002724=cNMP_binding=PD(33.3=48.3)
C2:
PF0061815=RasGEF_N=PU(48.6=94.5)
Main Inclusion Isoform:
FBpp0302889
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0111548, FBpp0302890, FBpp0302891
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGATCGGTAGACGTTGTGA
R:
TCATCAACCAGCTGAACGACG
Band lengths:
250-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)