MmuEX0038797 @ mm9
Exon Skipping
Gene
ENSMUSG00000049044 | Rapgef4
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:MGI Symbol;Acc:MGI:1917723]
Coordinates
chr2:71819272-71872176:+
Coord C1 exon
chr2:71819272-71819408
Coord A exon
chr2:71869090-71869232
Coord C2 exon
chr2:71872088-71872176
Length
143 bp
Sequences
Splice sites
3' ss Seq
TGCCCTCTCTCCCCCTGCAGGCC
3' ss Score
14.39
5' ss Seq
CACGTAAGG
5' ss Score
7.47
Exon sequences
Seq C1 exon
GGCCGCGGGAGCCCGCCGGGAGGCGCGCGGGAGGTGGCCGCGGCCCGGGGCCACCGCGCGCTGCTGCCCAACATGGTCGCTGCGCACGCTGCACACTCTCAGTCCTCGGCCGAGTGGATCGCCTGCCTGGATAAAAG
Seq A exon
GCCGTTGGAGCGATCTAGTGAAGATGTGGACATAATTTTCACGCGGCTGAAAGGAGTTAAAGCTTTTGAGAAATTTCACCCAAACCTCCTTCGTCAGATTTGTTTATGCGGTTACTATGAGAACCTGGAAAAAGGAATCACAC
Seq C2 exon
TGTTTCGCCAAGGGGATATTGGAACCAACTGGTATGCTGTCCTGGCTGGGTCTTTGGATGTTAAAGTGTCTGAGACCAGCAGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049044-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0002724=cNMP_binding=PU(9.8=18.4)
C2:
PF0002724=cNMP_binding=FE(31.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCCCAACATGGTCG
R:
TGACTGCTGGTCTCAGACACT
Band lengths:
162-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: