GgaEX7011928 @ galGal4
Exon Skipping
Gene
ENSGALG00000006348 | RAPGEF3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:HGNC Symbol;Acc:HGNC:16629]
Coordinates
chrLGE22C19W28_E50C23:434647-435626:+
Coord C1 exon
chrLGE22C19W28_E50C23:434647-434793
Coord A exon
chrLGE22C19W28_E50C23:435280-435389
Coord C2 exon
chrLGE22C19W28_E50C23:435538-435626
Length
110 bp
Sequences
Splice sites
3' ss Seq
AGGCTGCTTTTCCCATTTAGGAC
3' ss Score
9.3
5' ss Seq
CAGGTGACA
5' ss Score
5.49
Exon sequences
Seq C1 exon
GGCTTGGTGGCCACATTGCATGAAGGGGACGACTTTGGGCAGCTGGCACTGGTGAACGATGCTCCCCGAGCAGCCAGCATCATCCTGAGGGAGGACAACTGCCACTTCCTGCGGGTGGACAAGCAGGACTTCAACCGCATCCTCAAG
Seq A exon
GACGTGGAAGCCAACACCATGCGCCTGAAGGAGCACGGGAAGGTGGTGTTGGTGCTGCAGAAGAACCTGCAGGGAGGCAGCAGCCAGCCGGCCGCCACGCGGAGCAGCAG
Seq C2 exon
GTACCTGGTGATGGCCGGGACGCCAGAGAAGATCCTGGAGCACCTGCTGGAGTTCATGAGGCTCGATGCCACGCTCTACGACCCCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006348-'18-19,'18-17,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=FE(55.8=100)
A:
PF0002724=cNMP_binding=PD(2.3=5.4)
C2:
PF0061815=RasGEF_N=PU(25.5=90.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTGGCCACATTGCATGAA
R:
GTCGTAGAGCGTGGCATCG
Band lengths:
226-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]