RnoEX0074024 @ rn6
Exon Skipping
Gene
ENSRNOG00000059961 | Rapgef3
Description
Rap guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:621869]
Coordinates
chr7:139244736-139245717:-
Coord C1 exon
chr7:139245571-139245717
Coord A exon
chr7:139245118-139245230
Coord C2 exon
chr7:139244736-139244824
Length
113 bp
Sequences
Splice sites
3' ss Seq
CGGTGTGGCTCCTCCCCCAGGAT
3' ss Score
8.73
5' ss Seq
CCGGTAACA
5' ss Score
5.92
Exon sequences
Seq C1 exon
GGGCTGGTGACCACGTTGCACGAGGGAGATGACTTTGGACAGCTGGCTCTGGTGAACGACGCACCTCGAGCAGCCACCATCATCCTTCGAGAAAATAACTGTCACTTTCTGCGTGTGGACAAGCAGGACTTCAACCGCATCATCAAG
Seq A exon
GATGTGGAAGCAAAAACCATGAGACTGGAAGAACACGGCAAAGTGGTGTTAGTTTTGGAGAGAACCTCTCAGGGTGCTGGCCCTTCCCGCCCTCCGACCCCAGGCAGGAACCG
Seq C2 exon
ATATACGGTAATGTCTGGCACCCCAGAGAAAATCCTAGAACTCCTGTTGGAGGCTATGAGACCGGATTCCAGTGCTCATGACCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059961-'17-23,'17-22,19-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.500 C2=0.161
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=FE(56.5=100)
A:
PF0002724=cNMP_binding=PD(2.4=5.3)
C2:
PF0061815=RasGEF_N=PU(24.8=90.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGGTGACCACGTTG
R:
CTGTTGGGTCATGAGCACTGG
Band lengths:
236-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]