DreEX0007308 @ danRer10
Exon Skipping
Gene
ENSDARG00000075924 | RAPGEF4 (1 of 2)
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:HGNC Symbol;Acc:HGNC:16626]
Coordinates
chr6:6746231-6749031:+
Coord C1 exon
chr6:6746231-6746377
Coord A exon
chr6:6748662-6748768
Coord C2 exon
chr6:6748946-6749031
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTCATGTGTTTTTAGGAT
3' ss Score
10.42
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GGTGTGGTTTGTACGCTGCATGAGGGAGATGATTTTGGCAAACTGGCGCTGGTAAATGACGCCCCCCGCGCCGCTTCCATCGTGCTGAGAGAGGACAACTGCCACTTCCTGAGGGTGGACAAAGAGGACTTCAACCGTATACTCAGG
Seq A exon
GATGTTGAAGCAAACACGGTGCGTCTAAAAGAGCATGAGCAGGATGTTTTGGTACTACAGAAGAGTCTCCGGCCCTCCAGCCATGGAAACATCCCAGCCCACTTCAA
Seq C2 exon
ATACACTGTGATGTCAGGCAGCCCTGAGAAGATTCTGGAGCATCTGCTGGAGACAATGCGACTGGACATTCATTTCTCTGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075924_MULTIEX1-2/17=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=FE(55.2=100)
A:
PF0002724=cNMP_binding=PD(2.3=5.6)
C2:
PF0061815=RasGEF_N=PU(24.8=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTTTGTACGCTGCATGA
R:
TCAGAGAAATGAATGTCCAGTCGC
Band lengths:
226-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]