RnoEX0074043 @ rn6
Exon Skipping
Gene
ENSRNOG00000001516 | Rapgef4
Description
Rap guanine nucleotide exchange factor 4 [Source:RGD Symbol;Acc:621886]
Coordinates
chr3:58866731-58874195:+
Coord C1 exon
chr3:58866731-58866877
Coord A exon
chr3:58868946-58869061
Coord C2 exon
chr3:58874107-58874195
Length
116 bp
Sequences
Splice sites
3' ss Seq
GGTATAATTTGTGTTTGCAGGAC
3' ss Score
7.17
5' ss Seq
AAAGTATGT
5' ss Score
6.93
Exon sequences
Seq C1 exon
GGTGTGGTCTGCACCCTGCATGAGGGAGATGACTTTGGCAAGTTAGCTCTGGTGAACGATGCTCCGAGAGCTGCATCCATTGTTCTTCGGGAAGATAATTGTCACTTCCTAAGAGTTGACAAGGAAGACTTCAATCGGATTCTGAGG
Seq A exon
GACGTTGAGGCGAATACAGTCAGACTTAAAGAACATGACCAAGATGTCTTGGTACTGGAGAAGGTCCCAGCAGGGAACAGAGCTTCTAATCAAGGAAACTCACAGCCTCAGCAAAA
Seq C2 exon
GTATACTGTGATGTCAGGAACACCTGAAAAGATTTTAGAGCATTTTCTAGAAACAATACGCCTTGAGCCATCTTTGAATGAAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001516-'42-28,'42-27,43-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.385 C2=0.161
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=FE(55.2=100)
A:
PF0002724=cNMP_binding=PD(2.3=5.1)
C2:
PF0061815=RasGEF_N=PU(26.2=90.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGTCTGCACCCTGC
R:
TGTTGCTTCATTCAAAGATGGCT
Band lengths:
234-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]