DreEX0060852 @ danRer10
Exon Skipping
Gene
ENSDARG00000079872 | rapgef4
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:ZFIN;Acc:ZDB-GENE-070912-385]
Coordinates
chr9:2960266-2965369:-
Coord C1 exon
chr9:2965223-2965369
Coord A exon
chr9:2962164-2962261
Coord C2 exon
chr9:2960266-2960351
Length
98 bp
Sequences
Splice sites
3' ss Seq
GTTTGTGTGGCTGTGTTCAGGAT
3' ss Score
7.86
5' ss Seq
CAAGTACAG
5' ss Score
0.24
Exon sequences
Seq C1 exon
GGTGTGGTGTGTACTCTACATGAGGGTGATGATTTCGGGAAGCTGGCTCTGGTGAATGACGCTCCTCGGGCCGCCTCCATCGTGCTGAGAGAAGACTTCTGCCACTTCCTCAGGGTGGATAAAGAAGACTTCAACAGAATCCTCAGG
Seq A exon
GATGTGGAGGCAAACACTGTCCGTCTGAAGGAACATGAAGAGGACGTGCTGGTTTTGGAGAAAGCTAACAACAGGAGCTCCAGTTCTTCTCCTCTCAA
Seq C2 exon
GTACACTGTGATGTCAGGAACTCCAGAGAAGATTCTGGAGCACCTTCTGGAGACCATGAAACTTGATTGCCAATTCTCAGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079872-'16-19,'16-17,20-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.189 C2=0.033
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=FE(55.2=100)
A:
PF0002724=cNMP_binding=PD(2.3=6.1)
C2:
PF0061815=RasGEF_N=PU(25.2=90.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGATTTCGGGAAGCTGGC
R:
TCATGGTCTCCAGAAGGTGCT
Band lengths:
180-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]