GgaEX6042288 @ galGal3
Exon Skipping
Gene
ENSGALG00000009357 | RAPGEF4
Description
NA
Coordinates
chr7:18797376-18801542:-
Coord C1 exon
chr7:18801396-18801542
Coord A exon
chr7:18800536-18800651
Coord C2 exon
chr7:18797376-18797464
Length
116 bp
Sequences
Splice sites
3' ss Seq
AATATTAACTTGTCTTGCAGGAC
3' ss Score
8.62
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GGTGTGGTATGTACTCTACATGAAGGAGATGATTTTGGCAAGCTAGCACTTGTGAATGATGCTCCCAGAGCAGCATCTATTGTTCTACGTGAAGACAACTGCCACTTCTTGAGAGTAGACAAAGAGGACTTCAACAGAATCCTTAGG
Seq A exon
GACGTGGAAGCAAATACTGTAAGACTCAAAGAACATGACCAGGATGTCTTGGTGTTGGAGAAGATCCCAGCAGGAAACAGAGTTTCTAATCAAGGAAGTTCACAGCCTCAGCACAA
Seq C2 exon
ATACATTGTGATGTCAGGAACTCCAGAGAAAATTTTAGAGCACTTTCTAGAAACTATGCGCCTTGAAGCAACTTTAAATGAAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009357-'21-25,'21-24,23-25=AN
Average complexity
A_S
Mappability confidence:
89%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.224 C2=0.056
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=FE(55.2=100)
A:
PF0002724=cNMP_binding=PD(2.3=5.1)
C2:
PF0061815=RasGEF_N=PU(25.5=90.3)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACTCTACATGAAGGAGATGATT
R:
TGTTGCTTCATTTAAAGTTGCTTCA
Band lengths:
226-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]