GgaEX6042282 @ galGal3
Exon Skipping
Gene
ENSGALG00000009357 | RAPGEF4
Description
NA
Coordinates
chr7:18912823-18923320:-
Coord C1 exon
chr7:18923178-18923320
Coord A exon
chr7:18921993-18922081
Coord C2 exon
chr7:18912823-18912969
Length
89 bp
Sequences
Splice sites
3' ss Seq
ACAATATTTCTTCTTTCCAGTAT
3' ss Score
8.04
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
ACCTTTGGAACGTTCCAGTGAAGATGTAGATATAATATTTACACGACTGAAAGAAGTGAAAGCCTTTGAGAAATTTCATCCAAACCTTCTCCAGCAGATATGTCTGTGTGGATATTATGAAAACCTGGAAAAAGGGATCACAT
Seq A exon
TATTCCGTCAGGGTGATATTGGGTCAAACTGGTATGCTGTTCTGACAGGATCGCTGGATGTGAAGGTTTCTGATACAAGCAACCACCAG
Seq C2 exon
GATGCTGTAACAATATGCACCCTGGGAATAGGAACTGCTTTTGGAGAGTCCATTCTGGATAACACTCCTCGCCATGCTACCATTGTTACCAGAGAATATAGCGAGCTCCTTCGAATTGAGCAGAAGGACTTCAAAGCACTTTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009357-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(9.8=18.4)
A:
PF0002724=cNMP_binding=FE(31.5=100)
C2:
PF0002724=cNMP_binding=FE(52.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACTGAAAGAAGTGAAAGCCT
R:
GCATGGCGAGGAGTGTTATCC
Band lengths:
178-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]