RnoEX0074041 @ rn6
Exon Skipping
Gene
ENSRNOG00000001516 | Rapgef4
Description
Rap guanine nucleotide exchange factor 4 [Source:RGD Symbol;Acc:621886]
Coordinates
chr3:58689630-58709070:+
Coord C1 exon
chr3:58689630-58689772
Coord A exon
chr3:58692939-58693027
Coord C2 exon
chr3:58708924-58709070
Length
89 bp
Sequences
Splice sites
3' ss Seq
CCTCACTGTCTCTCTTTCAGTGT
3' ss Score
11.5
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GCCGTTGGAGCGATCTAGTGAAGATGTGGACATAATTTTCACGCGGCTGAAAGGAGTTAAAGCTTTTGAGAGATTTCACCCAAACCTCCTTCGTCAGATTTGTTTATGCAGTTACTATGAGAACCTGGAGAAAGGAATCACAC
Seq A exon
TGTTTCGACAAGGGGACATTGGAACCAACTGGTATGCTGTCCTAGCTGGGTCTTTGGATGTTAAAGTGTCTGAGACCAGCAGTCACCAG
Seq C2 exon
GATGCGGTGACCATCTGTACCCTGGGAATTGGGACAGCCTTTGGAGAGTCCATTCTCGACAACACACCTCGTCATGCAACCATTGTTACCAGAGAGAACAGTGAGCTCCTCCGTATCGAGCAGGAAGACTTTAAGGCACTATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001516-'4-7,'4-4,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(9.8=18.4)
A:
PF0002724=cNMP_binding=FE(31.5=100)
C2:
PF0002724=cNMP_binding=FE(52.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAAACCTCCTTCGTCAGA
R:
CGGAGGAGCTCACTGTTCTCT
Band lengths:
179-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]