DreEX0060861 @ danRer10
Exon Skipping
Gene
ENSDARG00000079872 | rapgef4
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:ZFIN;Acc:ZDB-GENE-070912-385]
Coordinates
chr9:3018528-3020537:-
Coord C1 exon
chr9:3020395-3020537
Coord A exon
chr9:3019418-3019506
Coord C2 exon
chr9:3018528-3018674
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTGTTAGTGT
3' ss Score
8.65
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
ACCAGAGGAGCGTTCAGGGGAAGACGTGGACATAATCATGGTGCGTCTGAAAAGTGTGAAGGCCTTCGAGAAGTTCCACCCACCTCTTCTTCAGCAGATCTGTCTGTGCGGCTTTTATGAATGTCTGGAGAAAGGCATCACTC
Seq A exon
TGTACAGGCAGGGTGACATCGGCACTAACTGGTACACCGTCCTGTCCGGTTCTCTAGACGTCAAAGTCTCCGAAACAGCAAACCATCAG
Seq C2 exon
GATGCGGTCACCATCTGCACGCTGGGCATCGGCACTGCTTTTGGAGAGTCTATCCTGGATAACACACCCCGCCATGCCACCATCGTCACCCGAGAGTTCAGCGAGCTGCTGCGGATCGAGCAGAAGGACTTCAGGAACCTGTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079872_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(9.8=18.4)
A:
PF0002724=cNMP_binding=FE(31.5=100)
C2:
PF0002724=cNMP_binding=FE(52.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGGGGAAGACGTGGACAT
R:
CTCTCCAAAAGCAGTGCCGAT
Band lengths:
179-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]