BtaEX6008993 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020984 | RAPGEF4
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:HGNC Symbol;Acc:HGNC:16626]
Coordinates
chr2:23892657-23913173:-
Coord C1 exon
chr2:23913029-23913173
Coord A exon
chr2:23910102-23910190
Coord C2 exon
chr2:23892657-23892803
Length
89 bp
Sequences
Splice sites
3' ss Seq
CCTGCCTGTTTCTTTTCCAGTAT
3' ss Score
11.1
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AGACCACTGGAACGATCCAGTGAAGATGTGGATATAATCTTCACACGGCTGAAAGAAGTTAAAGCTTTTGAGAAATTTCACCCAAATCTCCTTCATCAGATTTGTTTATGTGGTTATTATGAGAATCTGGAAAAAGGAATAACAT
Seq A exon
TATTTCGCCAAGGTGATATTGGAACCAACTGGTATGCTGTCCTGGCAGGGTCTTTGGATGTTAAAGTTTCTGAGACCAGCAGTCACCAG
Seq C2 exon
GACGCAGTGACCATCTGCACTCTGGGAATTGGGACGGCCTTTGGAGAGTCCATTCTGGACAACACCCCACGCCATGCGACCATCGTTACCAGGGAGAGCAGTGAGCTGCTCCGCATCGAGCAGAAGGACTTCAAGGCACTATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020984-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(9.8=18.4)
A:
PF0002724=cNMP_binding=FE(31.5=100)
C2:
PF0002724=cNMP_binding=FE(52.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCACACGGCTGAAAGAAGT
R:
GTGGGGTGTTGTCCAGAATGG
Band lengths:
178-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]