GgaEX6042293 @ galGal3
Exon Skipping
Gene
ENSGALG00000009357 | RAPGEF4
Description
NA
Coordinates
chr7:18774012-18779563:-
Coord C1 exon
chr7:18779466-18779563
Coord A exon
chr7:18774667-18774792
Coord C2 exon
chr7:18774012-18774190
Length
126 bp
Sequences
Splice sites
3' ss Seq
GATATTTTTTCCATTTGTAGGCA
3' ss Score
8.95
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
AAAAAGTCGTGCTCAAGCCTCATGATGTTTCAGTGTTTACAACTCTCAGTGTTAATGGACGGCTCTTTGCTTGCCCGCGTGACCAGTTTGATTCACTG
Seq A exon
GCACCGTTACCGGAACAAGAGGGACCGTCAGCTGGTACAGTTGGGACGTTTGAACTGATGAGCTCCAAAGACCTGGCACATCAGATGACAATTTACGACTGGGAGCTCTTCAACTGTGTGCATGAG
Seq C2 exon
CTGGAACTGATCTATCACACTTTTGGAAGGCATAATTTTAAAAAGACCACGGCAAATCTGGATCTATTTTTAAGAAGATTTAATGAAATTCAGTTCTGGGTGGTCACTGAGATTTGTCTTTGCTCTCAACTCAGCAAGCGTGTGCAGCTATTGAAGAAATATATTAAGATAGCTGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009357-'32-36,'32-35,35-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.000
Domain overlap (PFAM):
C1:
PF0078818=RA=PD(35.0=84.8)
A:
PF0061714=RasGEF=PU(13.0=57.1)
C2:
PF0061714=RasGEF=FE(31.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCTCAAGCCTCATGATGT
R:
TCTTCAATAGCTGCACACGCT
Band lengths:
248-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]