RnoEX0074048 @ rn6
Exon Skipping
Gene
ENSRNOG00000001516 | Rapgef4
Description
Rap guanine nucleotide exchange factor 4 [Source:RGD Symbol;Acc:621886]
Coordinates
chr3:58895967-58901330:+
Coord C1 exon
chr3:58895967-58896064
Coord A exon
chr3:58900622-58900747
Coord C2 exon
chr3:58901152-58901330
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTCTCACAATCATTCCCAGACT
3' ss Score
5.51
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
AAAAGGTGGTGCTCAAACCTAATGATGTTTCAGTATTTACGACGCTCACCATTAATGGACGCCTGTTTGCCTGCCCGCGAGAGCAATTCGACTCACTG
Seq A exon
ACTCCCTTGCCAGAACAGGAGGGCCCGACCACTGGGACAGTGGGGACGTTTGAACTGATGAGCTCGAAAGACTTGGCGTACCAGATGACAACGTATGACTGGGAACTCTTCAACTGTGTGCACGAG
Seq C2 exon
CTGGAGCTAATCTACCACACATTTGGAAGGCATAATTTTAAAAAGACCACAGCAAACTTGGATTTGTTCCTGAGGAGATTTAATGAAATTCAGTTTTGGGTTGTCACTGAGATCTGCCTTTGTTCCCAGCTCAGCAAACGTGTTCAGCTTTTGAAAAAATTTATCAAGATAGCGGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001516-'55-42,'55-41,56-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.190 C2=0.000
Domain overlap (PFAM):
C1:
PF0078818=RA=PD(35.0=84.8)
A:
PF0061714=RasGEF=PU(13.0=57.1)
C2:
PF0061714=RasGEF=FE(31.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGTGCTCAAACCTAATGA
R:
CTGAACACGTTTGCTGAGCTG
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]