GgaEX6042499 @ galGal3
Exon Skipping
Gene
ENSGALG00000010943 | E1C4S3_CHICK
Description
NA
Coordinates
chr7:21090000-21091962:+
Coord C1 exon
chr7:21090000-21090206
Coord A exon
chr7:21090558-21090863
Coord C2 exon
chr7:21091582-21091962
Length
306 bp
Sequences
Splice sites
3' ss Seq
TTCATTCTGTGATGTGACAGGCA
3' ss Score
5.96
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
ACACTACGTGCTGCTGGGAAAACATACATGATATTTTTCGTTTTGGTGATTTTTCTGGGCTCGTTCTATCTGATCAACTTGATCCTGGCTGTGGTTGCCATGGCCTATGAAGAGCAGAACCAAGCAACCCTTGAAGAAGCAGAGCAGAAAGAGGCAGAATTTCAACAAATGCTGGAACAGCTAAAGAAGCAGCAAGAAGCAGCTCAG
Seq A exon
GCAGCAGCGGTGGCAGCGGCGGCAGTTACAGCATCCGCAGAGTCCAGGGAACCCAGCGCTGCGGGAGGAGCAGGTGGGCTTTCAGAAAGTTCCTCAGAGGCTTCCAAATTGAGCTCAAAGAGTGCCAAAGAGAGGAGAAATAGAAGGAAAAAAAGAAAACAGAAAGAACAGTCTGGAGGAGAGGAAAAAGATGAAGATGAATTTCACAAGTCTGAATCAGAAGACAGCATCAGAAGAAAAGGTTTCCGGTTATCTATTGAAGGCAATAGACTGACATATGAAAAGAAATACTCTTCTCCACATCAG
Seq C2 exon
TCTTTGCTGAGCATTCGTGGCTCCCTGTTTTCCCCAAGGCGCAACAGCAGAACCAGTCTTTTCAGCTTCAGAGGTAGAGCAAAGGATATAGGATCTGAAAATGACTTTGCTGATGATGAGCACAGCACTTTTGAAGACAATGATAGCAGAAGAGATTCTCTCTTTGTGCCGCGCAGACACGGTGAACGGCGCAACAGTAACATTAGTCAGGCCAGTAGGTCATCCAGGATGCTGGCAGTGTTTCCAGTGAATGGGAAGATGCACAGCACTGTGGATTGCAATGGGGTGGTTTCCCTGGTTGGTGGACCATCTGTTCCTACATCGCCTGTTGGACAGCTTCTGCCAGAGGTGATAATAGATAAACCAGCTACTGATGACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010943-'9-11,'9-9,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.134 A=0.767 C2=0.551
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(11.6=44.9),PF0253517=Zip=FE(39.5=100)
A:
PF119333=DUF3451=PU(31.1=68.6)
C2:
PF119333=DUF3451=FE(53.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTTGCCATGGCCTATGAA
R:
GGATGACCTACTGGCCTGACT
Band lengths:
342-648
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]