MmuEX6101747 @ mm9
Exon Skipping
Gene
ENSMUSG00000064329 | Scn1a
Description
sodium channel, voltage-gated, type I, alpha [Source:MGI Symbol;Acc:MGI:98246]
Coordinates
chr2:66162628-66165914:-
Coord C1 exon
chr2:66165708-66165914
Coord A exon
chr2:66163959-66164243
Coord C2 exon
chr2:66162628-66163008
Length
285 bp
Sequences
Splice sites
3' ss Seq
TTGGTTTCTCCTCTATATAGCAG
3' ss Score
6.83
5' ss Seq
CAGGTACGC
5' ss Score
10.12
Exon sequences
Seq C1 exon
ACATTGCGTGCTGCTGGCAAAACCTACATGATATTTTTTGTGCTGGTCATTTTCTTGGGCTCATTCTACCTGATAAACTTGATCCTGGCTGTGGTGGCCATGGCCTATGAGGAGCAGAATCAGGCCACACTGGAGGAGGCTGAACAGAAAGAGGCAGAATTTCAGCAGATGTTGGAGCAACTTAAGAAGCAGCAAGAGGCTGCACAG
Seq A exon
CAGGCAGCGGCTACAACAGCCTCAGAACATTCCAGGGAGCCCAGTGCAGCAGGCAGGCTCTCAGATAGCTCTTCAGAAGCCTCTAAGTTGAGTTCGAAGAGTGCTAAAGAAAGACGAAATCGGAGGAAAAAAAGGAAACAGAAAGAGCAGTCTGGAGGAGAAGAGAAAGATGATGATGAATTCCACAAGTCTGAGTCTGAAGACAGCATCAGGAGGAAGGGGTTTCGCTTCTCCATAGAAGGGAATAGACTGACATATGAAAAGAGGTACTCTTCCCCGCATCAG
Seq C2 exon
TCTCTGTTAAGCATTCGTGGTTCCCTGTTCTCCCCAAGACGCAATAGCAGAACAAGTCTTTTCAGCTTTAGAGGGCGAGCCAAGGATGTGGGGTCTGAGAATGACTTTGCTGATGATGAACACAGCACCTTTGAGGATAATGAGAGCCGTAGAGACTCACTGTTCGTTCCCCGAAGACACGGAGAGCGACGCAACAGTAACCTGAGCCAGACCAGCAGGTCCTCCCGAATGCTGGCGGTGTTTCCAGCCAATGGGAAGATGCACAGCACGGTGGATTGCAATGGTGTGGTTTCCTTGGTTGGTGGACCCTCAGTTCCCACATCGCCAGTTGGACAGCTTCTGCCAGAGGTGATAATAGATAAGCCAGCTACTGATGACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064329-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=0.853 C2=0.639
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(11.6=44.9),PF0293211=Neur_chan_memb=PU(33.3=89.9)
A:
PF0293211=Neur_chan_memb=FE(50.5=100),PF119333=DUF3451=PU(31.1=73.7)
C2:
PF0293211=Neur_chan_memb=PD(11.2=15.7),PF119333=DUF3451=FE(53.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGGAGGCTGAACAGAA
R:
TGGTCTGGCTCAGGTTACTGT
Band lengths:
293-578
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: