GgaEX6042519 @ galGal3
Exon Skipping
Gene
ENSGALG00000011009 | F1NN72_CHICK
Description
NA
Coordinates
chr7:21334792-21338360:-
Coord C1 exon
chr7:21338219-21338360
Coord A exon
chr7:21337218-21337424
Coord C2 exon
chr7:21334792-21335079
Length
207 bp
Sequences
Splice sites
3' ss Seq
TATTATCTCTTTTTCCCCAGACA
3' ss Score
10.12
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
TCAATGTCCAGAAGGATATATATGTGTGAAAGCTGGTAGAAACCCCAACTATGGCTACACAAGTTTTGATACATTCAGTTGGGCATTCTTGTCACTGTTTCGATTGATGACTCAGGACTTTTGGGAGAATCTTTACCAGCTG
Seq A exon
ACACTGCGTGCTGCTGGAAAAACATATATGATATTTTTTGTTTTGGTCATTTTCCTGGGCTCTTTCTACCTGATTAATTTGATCCTGGCTGTGGTTGCTATGGCCTATGAAGAACAGAATCAAGCAACCATGGAAGAAGCAGAACAGAAAGAAGCAGAATTTCAGCAAATGCTGGAACAACTGAAAAAGCAACAGGAAGAAGCTCAG
Seq C2 exon
GCAGCAGCAGCAGCTGCAGCAGCTGACTCAAGAGATTATAGCGGAGTAGGTGGAATAGGTGGATTCTCTGAGAGTTCTTCTGAGGCATCCAAACTGAGTTCAAAGAGTGCTAAAGAGAGGAGGAATAGAAGAAAGAAAAAAAAGCAAAAAGAACAAGCTGAAGGTGAGAAGGATGAGGAAGAATTTCGCAAATCCGAATCAGAGGACAGCATCAAAAGAAAAGGCTTCCGATTTTCCATTGAGGGGAATAGACTGACATATGAAAAGAGATTCTCTTCCCCACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011009-'14-14,'14-13,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.194 C2=0.521
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(21.0=100),PF146251=Lustrin_cystein=PD(48.6=37.5)
A:
PF0052026=Ion_trans=PD(11.4=44.9)
C2:
PF119333=DUF3451=PU(30.8=71.9)

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAACTATGGCTACACAAGT
R:
TGTCCTCTGATTCGGATTTGCG
Band lengths:
308-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]