GgaEX6042519 @ galGal4
Exon Skipping
Gene
ENSGALG00000011009 | SCN2A
Description
sodium channel, voltage gated, type II alpha subunit [Source:HGNC Symbol;Acc:HGNC:10588]
Coordinates
chr7:19355539-19359107:-
Coord C1 exon
chr7:19358966-19359107
Coord A exon
chr7:19357965-19358171
Coord C2 exon
chr7:19355539-19355826
Length
207 bp
Sequences
Splice sites
3' ss Seq
TATTATCTCTTTTTCCCCAGACA
3' ss Score
10.12
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
TCAATGTCCAGAAGGATATATATGTGTGAAAGCTGGTAGAAACCCCAACTATGGCTACACAAGTTTTGATACATTCAGTTGGGCATTCTTGTCACTGTTTCGATTGATGACTCAGGACTTTTGGGAGAATCTTTACCAGCTG
Seq A exon
ACACTGCGTGCTGCTGGAAAAACATATATGATATTTTTTGTTTTGGTCATTTTCCTGGGCTCTTTCTACCTGATTAATTTGATCCTGGCTGTGGTTGCTATGGCCTATGAAGAACAGAATCAAGCAACCATGGAAGAAGCAGAACAGAAAGAAGCAGAATTTCAGCAAATGCTGGAACAACTGAAAAAGCAACAGGAAGAAGCTCAG
Seq C2 exon
GCAGCAGCAGCAGCTGCAGCAGCTGACTCAAGAGATTATAGCGGAGTAGGTGGAATAGGTGGATTCTCTGAGAGTTCTTCTGAGGCATCCAAACTGAGTTCAAAGAGTGCTAAAGAGAGGAGGAATAGAAGAAAGAAAAAAAAGCAAAAAGAACAAGCTGAAGGTGAGAAGGATGAGGAAGAATTTCGCAAATCCGAATCAGAGGACAGCATCAAAAGAAAAGGCTTCCGATTTTCCATTGAGGGGAATAGACTGACATATGAAAAGAGATTCTCTTCCCCACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011009-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.203 C2=0.526
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.5=100)
A:
PF0052026=Ion_trans=PD(11.6=44.9),PF143621=DUF4407=PU(39.3=79.7)
C2:
PF143621=DUF4407=PD(58.6=85.4),PF119333=DUF3451=PU(30.8=71.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAACTATGGCTACACAAGT
R:
TGTCCTCTGATTCGGATTTGCG
Band lengths:
308-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]