BtaEX6009408 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038180 | SCN2A
Description
sodium channel, voltage gated, type II alpha subunit [Source:HGNC Symbol;Acc:HGNC:10588]
Coordinates
chr2:31042052-31044923:-
Coord C1 exon
chr2:31044782-31044923
Coord A exon
chr2:31044435-31044641
Coord C2 exon
chr2:31042052-31042339
Length
207 bp
Sequences
Splice sites
3' ss Seq
TATCTCTTCCATTTTTACAGACA
3' ss Score
9.12
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
CCAGTGTCCAGAAGGATACATCTGTGTGAAGGCTGGTCGAAACCCCAACTATGGCTACACAAGCTTTGACACCTTTAGCTGGGCTTTCCTGTCCTTATTTCGTCTCATGACTCAAGACTTCTGGGAAAACCTTTATCAGCTG
Seq A exon
ACACTACGTGCTGCTGGGAAAACATACATGATATTTTTTGTGCTGGTCATTTTCTTGGGCTCCTTCTATCTAATAAATTTGATCCTGGCTGTGGTGGCCATGGCCTATGAAGAACAGAATCAGGCAACGCTGGAAGAGGCTGAACAGAAAGAAGCTGAATTTCAGCAGATGCTTGAACAGCTTAAAAAGCAACAAGAAGAAGCTCAG
Seq C2 exon
GCAGCAGCTGCAGCAGCTTCGGCTGAATCAAGAGAGTTCAGCGGTGCTGGTGGGATCGGGGTTTTCTCAGAGAGTTCTTCAGTAGCATCAAAATTGAGCTCCAAGAGTGAAAAAGAGCTGAAAAACAGAAGGAAGAAGAAGAAACAGAAAGAACAGTCTGGAGAAGAAGAAAAGGAAGATGGGGTCCGCAAATCTGAATCTGAAGACAGCATAAGAAGAAAAGGTTTCCGGTTTTCTTTGGAAGGAAGCAGGCTGACATATGAAAAGAGGTTTTCCTCTCCACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038180-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.058 C2=0.375
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.5=100)
A:
PF0052026=Ion_trans=PD(11.6=44.9)
C2:
PF119333=DUF3451=PU(30.8=71.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCGAAACCCCAACTATGGC
R:
GCGGACCCCATCTTCCTTTTC
Band lengths:
297-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]