GgaEX6042531 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:21404825-21408296:+
Coord C1 exon
chr7:21404825-21405172
Coord A exon
chr7:21406779-21406911
Coord C2 exon
chr7:21408058-21408296
Length
133 bp
Sequences
Splice sites
3' ss Seq
CCTCAGTATTTCATTTACAGGGC
3' ss Score
7.23
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
TCTTTGCTAAGCATCCGTGGTTCCCTGTTCTCACCAAGGCGCAACAGCAAAACAAGCATTTTCAGTTTCAGAGGTCGCACAAGGGATATAGGATCTGAAAATGACTTTGCTGATGATGAGCACAGCACTCTTGAGGACAACGAAAGCAGAAGGGATTCTCTCTTTGTTCCAAATCGACATGGAGAAAGGCGTAACAGCAACATCAGTCAGGCCAGTATGTCATCCAGAGTGGTGCCAGCCCTTCCGGCCAATGGGAAGATGCATAGCGCTGTAGATTGCAACGGAGTAGTCTCCTTAGTTGGAGGACCTTCAACTCTAACTTCACCTACTGGACAGCTTCTACCAGAG
Seq A exon
GGCACCACTACTGAAACAGAAATAAGAAAAAGAAGACTGAGTTCTTATCAGATTTCCATGGAAATGCTGGAAGATTCTGCTGCAAGACAAAGAGCAATGAGTATAGCCAGTATACTTACAAACACAATGGAAG
Seq C2 exon
AGCTTGAAGAATCCAGACAGAAATGTCCCCCATGCTGGTACAGATTTGCAAATACTTTCTTGATCTGGGATTGCTGGAGTCCATGGTTAAAAGTAAAACATGTTGTCAATTTAGTAGTGATGGATCCATTTGTTGATCTTGCTATAACTATTTGCATTGTTTTGAACACCTTGTTTATGGCCATGGAACATTACCCAATGACAGAACAATTTAGCAGTGTCCTTTCTGTGGGAAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011040-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.638 A=0.133 C2=0.000
Domain overlap (PFAM):
C1:
PF119333=DUF3451=FE(50.9=100)
A:
PF119333=DUF3451=PD(16.4=82.2)
C2:
PF0052026=Ion_trans=PU(17.9=42.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACAACGAAAGCAGAAGGG
R:
CCAGCATGGGGGACATTTCTG
Band lengths:
253-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]