RnoEX6017120 @ rn6
Exon Skipping
Gene
ENSRNOG00000005007 | Scn3a
Description
sodium voltage-gated channel alpha subunit 3 [Source:RGD Symbol;Acc:3635]
Coordinates
chr3:51579741-51582285:-
Coord C1 exon
chr3:51582085-51582285
Coord A exon
chr3:51580790-51580922
Coord C2 exon
chr3:51579741-51579979
Length
133 bp
Sequences
Splice sites
3' ss Seq
CATCAGTATTTGGTTTGCAGGGT
3' ss Score
5.3
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
TCTCTCTTGAGTATCCGTGGCTCCCTGTTTTCCCCAAGACGCAATAGCAAAACGAGCATTTTCAGCTTCAGAGGTCGGGCGAAGGACGTGGGGTCTGAGAATGACTTTGCAGACGATGAGCACAGCACCTTCGAGGACAGCGAGAGCAGGAGAGACTCCCTGTTTGTGCCGCACAGACCTGGAGAGCGACGCAACAGTAAC
Seq A exon
GGTACCACCACTGAAACGGAAGTCAGGAAGAGAAGGCTAAGTTCTTACCAGATTTCGATGGAAATGCTGGAGGATTCCTCTGGAAGACAAAGAGCCATGAGCATAGCCAGTATCCTGACCAACACCATGGAGG
Seq C2 exon
AACTTGAAGAATCTAGACAGAAGTGCCCACCATGCTGGTATAGATTCGCCAATGTGTTTTTGATCTGGGACTGCTGTGATGCATGGTTAAAAGTGAAGCATCTTGTGAATTTAATTGTGATGGATCCATTTGTTGATCTTGCCATAACAATTTGCATCGTATTAAATACACTGTTCATGGCCATGGAGCACTATCCCATGACCCAGCAGTTCAGCAGTGTGCTGACTGTGGGAAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005007-'18-20,'18-18,23-20=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.617 A=0.393 C2=0.000
Domain overlap (PFAM):
C1:
PF119333=DUF3451=FE(46.8=100)
A:
PF119333=DUF3451=PD(0.7=2.2)
C2:
PF0052026=Ion_trans=PU(1.6=3.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGACTCCCTGTTTGTGCC
R:
GGATAGTGCTCCATGGCCATG
Band lengths:
248-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]