GgaEX6042584 @ galGal3
Exon Skipping
Gene
ENSGALG00000011120 | SLC4A10
Description
NA
Coordinates
chr7:22847224-22885316:-
Coord C1 exon
chr7:22885101-22885316
Coord A exon
chr7:22859193-22859274
Coord C2 exon
chr7:22847224-22847370
Length
82 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTTTTCTGTTTGCAGAGA
3' ss Score
10.99
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATTTAAGATCTGATATCTGGAGGGTAATGACTCCAGCACCTACTGATGGACAGAATGGCTGTTAATGCTTTCTTTGCTAGCCCAGAAGATTTTGAGAGATAGATGGATCTGTGATGCACTTTTGTAAGACAGGAAATGCAATTTTTGGGGGTCTCTGGAAATAGAAAGGTCATGCAGCTTGGAACCGGTGAGACATTACAATCTTTAAGTCATCAG
Seq A exon
AGAAATGATGAGGAAGCTGTTGTGGATAGAGGTGGAACTCGCTCCATTCTCAAAACTCATTTTGAAAAGGAAGATCTAGAAG
Seq C2 exon
GTCATCGAACGTTGTTCATTGGCGTTCACGTGCCACTGGGTGGAAGAAAAAGTCACAGGCGCCATAGGCACCGTGGACATAAACACAGAAAAAGAGACAGGGAACGAGATTCAGGATTAGAAGATGGGAGAGAGTCTCCTCCTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011120-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.750 C2=0.700
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTTCTTTGCTAGCCCAGA
R:
CGTGAACGCCAATGAACAACG
Band lengths:
181-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]