BtaEX6009511 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015317 | SLC4A10
Description
sodium-driven chloride bicarbonate exchanger [Source:RefSeq peptide;Acc:NP_001033217]
Coordinates
chr2:34757265-34826834:-
Coord C1 exon
chr2:34826695-34826834
Coord A exon
chr2:34792526-34792607
Coord C2 exon
chr2:34757265-34757411
Length
82 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTCTCTCTCTTCCAGAGA
3' ss Score
12.55
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CTAGCCCTGAAGATGCTGAGACATAGAGGTGGCTGTGATTATCTTTTGTAAGACAGGAAATGCAATCTTTAGGGATCTCTGGAAATAGAAAGGTCATGCAGTCTGGAACCTGTGAGTCTTTTCAATCTCTAAGTCATCAG
Seq A exon
AGAAATGATGAAGAAGCAGTTGTGGATAGAGGTGGAACTCGTTCTATTCTCAAAACACACTTTGAGAAAGAAGATTTAGAAG
Seq C2 exon
GTCATCGGACACTATTTATTGGCGTTCATGTGCCCCTGGGAGGAAGAAAAAGCCATCGACGTCACAGGCATCGTGGTCATAAACACAGAAAGAGAGACAGAGAGAGAGATTCAGGACTAGAGGATGGAAGGGAGTCACCTTCCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015317-'1-2,'1-1,2-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.714 C2=0.680
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAGACATAGAGGTGGCT
R:
CTTTTTCTTCCTCCCAGGGGC
Band lengths:
179-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]