HsaEX6016241 @ hg38
Exon Skipping
Gene
ENSG00000144290 | SLC4A10
Description
solute carrier family 4 member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr2:161424373-161804595:+
Coord C1 exon
chr2:161424373-161624566
Coord A exon
chr2:161770973-161771054
Coord C2 exon
chr2:161804449-161804595
Length
82 bp
Sequences
Splice sites
3' ss Seq
TCCTTATCCTCATTTAACAGAGA
3' ss Score
8
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TAAACCTTATTTACATCATCTTGCTTGAATTATGTCTCCTATAGGGTTCTGAGAATGAAGCGAGTACCTCAAAGTGTCAAAATCAGACTGATCTGGTTGGAGGCCAACTTGGACTAGTCTATATGAAAAGTGAGCATCTTAGGTGAGATTTTTAATGCCCATTAGACTTGTAGCATTGCTTGCTGTATTTTATACTAGTAGCCAGGTGTGGGCAGTGATACAGGGCTTGGGGGATCTCTCTTACCGGCCCAGGGATCCAAGGCATTCAGTGCAAAACCTGGCCAGCAGCCCGAGTGAGTAGGAGCCATGTGACTCTGGTGAGTTGGAGTGTGCAATTGCCTCCTGCTTCAGAGCTACCTGATCCGAATACTAAGCAGAGCGAGTGCCGGGCTGAGTGTAAGACACTGAAGACACTGCAGAGCAAGGTGCTTATTCCAGAGGCGTTACAAAACATGGAGATTAAAGACCAGGGAGCCCAAATGGAGCCGCTGCTGCCTACG
Seq A exon
AGAAATGATGAAGAAGCAGTTGTGGATAGAGGTGGAACTCGTTCTATTCTCAAAACACACTTTGAGAAAGAAGATTTAGAAG
Seq C2 exon
GTCATCGAACACTATTTATTGGAGTACATGTGCCCTTGGGAGGAAGAAAAAGCCATCGACGTCACAGGCATCGTGGTCATAAACACAGAAAGAGAGACAGAGAAAGAGATTCAGGATTAGAGGATGGAAGGGAGTCACCTTCTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144290-'11-27,'11-24,21-27
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.729 C2=0.700
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGAAGACACTGCAGAGC
R:
CCTGTGACGTCGATGGCTTTT
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains