MmuEX6101591 @ mm9
Exon Skipping
Gene
ENSMUSG00000026904 | Slc4a10
Description
solute carrier family 4, sodium bicarbonate cotransporter-like, member 10 [Source:MGI Symbol;Acc:MGI:2150150]
Coordinates
chr2:61884519-62028943:+
Coord C1 exon
chr2:61884519-61884749
Coord A exon
chr2:61996263-61996344
Coord C2 exon
chr2:62028797-62028943
Length
82 bp
Sequences
Splice sites
3' ss Seq
TATTTTTCCTCACACTATAGAGA
3' ss Score
5.62
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CAAAACCTGGCCAGCAGCCCGAGTGAGTAGGAGCCATGTGACTCTGGTGAGTTGGAGTGTGCAGTTGCCTCCTGCTTCAGAGCTACCTGATCCGAATACTAAGCAGAGCGAGTGCCCGGCTGAGTGGAAGACACTGAAGACACTGCAGAGCAAGGTGCTTTTTTTCCAGAGGTGTTACAGAACATGGAGATTAAAGACCAGGGAGCCCAAATGGAGCCGCTGCTGCCTACG
Seq A exon
AGAAATGATGAAGAAGCCGTTGTGGATAGAGGTGGAACACGCTCTATTCTCAAAACACATTTTGAGAAAGAAGATTTAGAAG
Seq C2 exon
GTCATCGGACATTATTTATTGGAGTTCATGTGCCCCTGGGTGGAAGAAAAAGCCATCGTCGTCACAGGCATCGTGGTCATAAGCACAGAAAGAGGGACAGAGAGAGAGATTCGGGACTGGAGGATGGAAGAGAGTCCCCTTCTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026904-'0-4,'0-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.750 C2=0.700
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACACTGCAGAGCAAGGTG
R:
TGTGCTTATGACCACGATGCC
Band lengths:
182-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: