DreEX0072998 @ danRer10
Exon Skipping
Gene
ENSDARG00000063133 | slc4a10a
Description
solute carrier family 4, sodium bicarbonate transporter, member 10a [Source:ZFIN;Acc:ZDB-GENE-100215-3]
Coordinates
chr11:10742046-10802228:-
Coord C1 exon
chr11:10802202-10802228
Coord A exon
chr11:10755966-10756047
Coord C2 exon
chr11:10742046-10742189
Length
82 bp
Sequences
Splice sites
3' ss Seq
CATTGTGTTTTGTTTTGCAGAGA
3' ss Score
10.68
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTTCAGAGTCCTGCTAGTGATTCTGAG
Seq A exon
AGACAGGATGAGGAAGCTGTGCTGGACAGAGGTGGGACTCGGTCTATGCTCAACACCAATTTTGAGAAAGAGGAGCTAGAAG
Seq C2 exon
GCCATCGTACCCTCTACATTGGTGTTCATGTACCTCTGGGTCGGAGATCACACAGACGGCATCGCCATCATGGACATCGCCACAGGAAGAGGTCACGAGAAAGGGACTCTGGAACAGAGGATGGCAGAGAATCACCTTCATACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063133-'1-4,'1-1,4-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.893 C2=0.837
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAGAGTCCTGCTAGTGATTCTG
R:
TGAAGGTGATTCTCTGCCATCC
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]