MmuEX6056572 @ mm9
Exon Skipping
Gene
ENSMUSG00000023032 | Slc4a8
Description
solute carrier family 4 (anion exchanger), member 8 [Source:MGI Symbol;Acc:MGI:1928745]
Coordinates
chr15:100592178-100605515:+
Coord C1 exon
chr15:100592178-100592405
Coord A exon
chr15:100605061-100605142
Coord C2 exon
chr15:100605259-100605515
Length
82 bp
Sequences
Splice sites
3' ss Seq
GCATATCTGTTTTTAAACAGAGG
3' ss Score
6.44
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GATTGGCTGCTGCGGGCGCCTCGCGGGCTGATGGCTATGAAGGTGGCGCCGGTTGATGGTTGACCGATCCTTGGATCCAGGGTAGGGGTCGCTGCGCGTGCGATCGTCTCACACTGGACTACAGGGCGCGGACTGCTGCAGCTCAACCTGGAACCTACCGGCGAGACCAGGCTCCGCCCGGCCATGCCCGCCGGGAGCAACGAGCCGGACGGCGTCCTCAGCTATCAG
Seq A exon
AGGCCAGATGAGGAAGCTGTGGTGGATCAGGGTGGGACCAGCACAATTCTCAACATTCACTATGAGAAAGAAGAGTTGGAAG
Seq C2 exon
CCTCGTCTTCCCTGGTCTTGAAAAGGAAAAAAGCCGAGGTGATGAACCCCACCCGTCCAGTCAGCTCATCAGAGACCTGAGACAGTGCTCAGAGAACTGGGAAGCTCGACATAAATACTAACAATAACCTTTTCCTTGAGGACGTGAAATACTCATTTAGCTCCCTGAAGTTTTTTTGTTTTGTTTTTTTATAACCTCATGGAGATGTAAAGTATCAACACATATTCAAAAGCAAATAAACTATCAGTCGTTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023032-'0-1,'0-0,1-1=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.800 C2=0.962
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGATCCAGGGTAGGGGTC
R:
TCAAGACCAGGGAAGACGAGG
Band lengths:
180-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: