HsaEX6066576 @ hg38
Exon Skipping
Gene
ENSG00000050438 | SLC4A8
Description
solute carrier family 4 member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chr12:51424771-51451022:+
Coord C1 exon
chr12:51424771-51425035
Coord A exon
chr12:51440708-51440789
Coord C2 exon
chr12:51450876-51451022
Length
82 bp
Sequences
Splice sites
3' ss Seq
ACTTATTTGTGTTTAAACAGAGA
3' ss Score
7.79
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTGCTCCGCGCCCTGATTGGCTGCGCAGGCCTCTCGCTGATTGGTTGCGGCGGATGCCTCGCGGGCCGGTGGCTATGGAGGCGGCGGCGGTTGATGGTTGACCGTTGGCTCCGGGGTGGGGGTCGCCGTTCGAGTGATCTGCTCAGACCCGACCAGAGGGCGCGGGCTGCTGATGCTTGGCTTGGAGCCCGTGGGGGAGACCTAGTTCGGCTCCGCCATGCCGGCCGCCGGGAGTAACGAGCCGGACGGCGTCCTCAGCTATCAG
Seq A exon
AGACCAGATGAAGAAGCTGTGGTGGATCAGGGTGGGACCAGTACAATTCTCAACATTCACTATGAAAAAGAAGAGCTGGAAG
Seq C2 exon
GTCACAGAACTCTGTATGTGGGAGTTCGGATGCCGCTTGGCCGGCAGAGCCATCGGCATCACCGCACTCATGGCCAGAAGCACCGGAGACGAGGGCGGGGCAAAGGAGCCAGCCAGGGGGAGGAAGGCCTGGAAGCCCTGGCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000050438-'6-24,'6-19,9-24
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.786 C2=0.967
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTTCGAGTGATCTGCTCAG
R:
GGCATCCGAACTCCCACATAC
Band lengths:
174-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains