MmuEX6056572 @ mm10
Exon Skipping
Gene
ENSMUSG00000023032 | Slc4a8
Description
solute carrier family 4 (anion exchanger), member 8 [Source:MGI Symbol;Acc:MGI:1928745]
Coordinates
chr15:100761747-100783095:+
Coord C1 exon
chr15:100761747-100761974
Coord A exon
chr15:100774630-100774711
Coord C2 exon
chr15:100782946-100783095
Length
82 bp
Sequences
Splice sites
3' ss Seq
GCATATCTGTTTTTAAACAGAGG
3' ss Score
6.44
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GATTGGCTGCTGCGGGCGCCTCGCGGGCTGATGGCTATGAAGGTGGCGCCGGTTGATGGTTGACCGATCCTTGGATCCAGGGTAGGGGTCGCTGCGCGTGCGATCGTCTCACACTGGACTACAGGGCGCGGACTGCTGCAGCTCAACCTGGAACCTACCGGCGAGACCAGGCTCCGCCCGGCCATGCCCGCCGGGAGCAACGAGCCGGACGGCGTCCTCAGCTATCAG
Seq A exon
AGGCCAGATGAGGAAGCTGTGGTGGATCAGGGTGGGACCAGCACAATTCTCAACATTCACTATGAGAAAGAAGAGTTGGAAG
Seq C2 exon
GTCATAGAACTCTGTATGTGGGGGTTCGGATGCCGCTGGGGAGGCAGAGCCATCGGCACCACCGCACTCATGGCCAGAAGCACCGGAGACGAGGAGGGCGGGGCAAAGGAGCCAGCCAGGGCGAGGAGGGCTTGGAAGCCTTGGCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023032-'0-9,'0-3,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.795 C2=0.910
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTCAACCTGGAACCTAC
R:
GGTGCTTCTGGCCATGAGTG
Band lengths:
175-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types