RnoEX0082870 @ rn6
Exon Skipping
Gene
ENSRNOG00000028879 | Slc4a8
Description
solute carrier family 4 member 8 [Source:RGD Symbol;Acc:735164]
Coordinates
chr7:142397371-142426744:+
Coord C1 exon
chr7:142397371-142397575
Coord A exon
chr7:142414404-142414485
Coord C2 exon
chr7:142426595-142426744
Length
82 bp
Sequences
Splice sites
3' ss Seq
GCATATCTGTTTTTAAACAGAGA
3' ss Score
6.7
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CGGGCTGATGGCTATGAAGGTGGCGCCGGTGGATGGTTGACCGGTCGTTGGATCCAGGGTAGGGGTCGCCGCGCGTGCGATCGGCTCACACAGGACCAGAGGGCGCGGACTGCTGCAGCTCAACCTGGAACCCACCAGCGAGACCAGGCTCCGCCCGGCCATGCCCGCCGGGAGCAACGAGCCGGACGGCGTCCTCAGCTATCAG
Seq A exon
AGACCAGATGAGGAAGCTGTGGTGGATCAGGGTGGGACCAGCACGATTCTCAACATTCACTATGAGAAAGAAGAGTTGGAAG
Seq C2 exon
GTCATAGAACTCTGTATGTGGGGGTTCGGATGCCACTGGGGAGGCAGAGCCATCGTCACCACCGAACTCATGGCCAGAAGCACCGGAGACGAGGAGGGCGGGGCAAAGGAGCCAGCCAGGGCGAGGAGGGCTTGGAAGCCTCCGCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028879-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.821 C2=0.922
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCAACCTGGAACCCAC
R:
CTTCTGGCCATGAGTTCGGTG
Band lengths:
170-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]