DreEX0073103 @ danRer10
Exon Skipping
Gene
ENSDARG00000015531 | slc4a8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:ZFIN;Acc:ZDB-GENE-131119-88]
Coordinates
chr6:40356888-40375801:+
Coord C1 exon
chr6:40356888-40357462
Coord A exon
chr6:40375440-40375521
Coord C2 exon
chr6:40375640-40375801
Length
82 bp
Sequences
Splice sites
3' ss Seq
TAAGCAAACATCTCTTACAGAGG
3' ss Score
3.97
5' ss Seq
AGGGTTAGT
5' ss Score
5.02
Exon sequences
Seq C1 exon
TAAAATAACTTCAGAACACTGTGTTTCACCATAAACGACAGAATTCAATGTAATCCACACACACATTTTTACCCTTATGAATTGTACACCCGCTTCAAACTATTTCTGGCGCTTTCCTGCATGTATAGGCGCAAAACCGCATCAATCGAATAACAGCTTCAGCAACAGTCCCAGTTCGAGCTCTGTGATTGGCTGGACAACATATGATGCCGCCACAGTCTGTACCTCTTCCCAAGTCCTGGAGAGCGCGCGCCTAACAGCATTAAAGTAGGCTAAAGACAGGGCGAATGTGCAGCTCAGTTTGAGACTGGATTAAGAGTATCCTACTTAATGCTTCTCTAACCTTATATGCATCAGTTGATCTGGAGTTTCTCAATACGAACTGCTAACCTGAGTCCGGTAGCTATTCTCTCTGTGGAAGCTGTAATCGACGCACCTTTAAAACGGAGTTAACCATGCCAGCCGAAAACAGCGACCAGGAGAGCATGCTGAGCTATCAG
Seq A exon
AGGCCTGGTGAGGAAGCAGTGGTGGACCATGGAGGCACTAGCTCAGTTCTGAATATCCATTATGAGAAAGAAGAGCTCGAGG
Seq C2 exon
GTCACAGGACTCTTTTTGTGGGTGTGCGGATGCCCATGGACAGACCGTCTCACCGTCATCACCGGCCGCACAGTTCCAGACACCGCCGCAGATCTGACAGGATGAGGGCTGGAGGCTCAGCTCAGGACGACGACAACTCAGAAAGTACCCCAGGGGCACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015531-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.821 C2=0.982
Domain overlap (PFAM):
C1:
PF079317=CPT=PU(12.5=80.0)
A:
PF079317=CPT=FE(28.1=100)
C2:
PF079317=CPT=FE(56.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAAACAGCGACCAGGAGAG
R:
TCTGAGTTGTCGTCGTCCTGA
Band lengths:
179-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]