GgaEX1053587 @ galGal4
Exon Skipping
Gene
ENSGALG00000011604 | SLC4A4
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4 [Source:HGNC Symbol;Acc:HGNC:11030]
Coordinates
chr4:49571259-49647244:+
Coord C1 exon
chr4:49571259-49571269
Coord A exon
chr4:49629344-49629417
Coord C2 exon
chr4:49647065-49647244
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTTATTACTATAGGAT
3' ss Score
9.69
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATGCATCAAAG
Seq A exon
GATGGAGGACGAGGCAGTACTGGATAGAGGGGCTTCCTTCCTTAAACATGTATGTGATGAAGAAGAAGTGGAAG
Seq C2 exon
GTCATCACACTGTTTACATTGGGGTCCACGTGCCGAAGAGCTACAGGAGAAGGCGGCGTCATAGGAGAAGACCTGGGCACAAAGAAAAGAAAGAAAAGGAGAAAATTTCTGAGAATTACTCTGACAAATCAGACGTAGAAAATGCTGATGAGACAAGCAGCAGCATCCTCAAACCACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011604-'0-4,'0-1,5-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.477 C2=0.721
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]