DreEX0073057 @ danRer10
Exon Skipping
Gene
ENSDARG00000013730 | slc4a4a
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4a [Source:ZFIN;Acc:ZDB-GENE-060526-274]
Coordinates
chr5:45252460-45276787:-
Coord C1 exon
chr5:45276671-45276787
Coord A exon
chr5:45269771-45269844
Coord C2 exon
chr5:45252460-45252633
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTTTTACTACTACAGGGT
3' ss Score
8.46
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TGAACAGCTGAATCGTTTGGCGTTGCAGTGGCTTCATTGATCGCGCTGGACTGAAGCACCAAACCACTGGAATAAATTATAAGCGATTCAACTTCCCAAAATGAGCGCCGGCAAGAG
Seq A exon
GGTGGAGGATGAGGCCGTGCTGGACCGAGGGGCATCGCTGCTCAAACCCTTGTGTGATCAGGAGGAGGTTGAAG
Seq C2 exon
GTCACCACACCATATACATCGGTGTGCATGTGCCAAAGAGCTACCGGCGACGGAGACGTCATCGCCGACGCACCAGTCACAAGGACAGAAAGGAGAAAGTGAGCGAGAACACTTCGGACAGGTCGGATGCAGAGAACAATGAGGAGGCCAGCAACAGCATCCTTAAACCACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013730-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.385 C2=0.712
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTTCCCAAAATGAGCGCC
R:
GGCCTCCTCATTGTTCTCTGC
Band lengths:
178-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]