MmuEX6018662 @ mm9
Exon Skipping
Gene
ENSMUSG00000060961 | Slc4a4
Description
solute carrier family 4 (anion exchanger), member 4 [Source:MGI Symbol;Acc:MGI:1927555]
Coordinates
chr5:89315843-89383982:+
Coord C1 exon
chr5:89315843-89316349
Coord A exon
chr5:89363774-89363847
Coord C2 exon
chr5:89383803-89383982
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTCTATTACTATAGGAT
3' ss Score
9.78
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TTCGGCCGCCTAGCCCATCCCCGAGCCCGGCCTCGGCTGCAGCGTCGGTTCCCGGCAGCCACACAGAGAGCCGGGCGCACACGCGGGAACTGCGGGAGGCAGAGTAGAGCGGAGCCGCCCCGCCGCCGCCGTCCCCTCCCCGAGGCCAGCACCTCTGCTCCGCGTCGCCGATCCCTCCCCGCGGGGCCGACCCTCCCGCGGCCACCCTCGCCCCTCGGCCGCCTCCCCGACGCACAGTGCGCAGCCACCCACCCGGCGCCAAAGTTGCGACCGCTGCCCCGCGCGCTCTGCGACCGGCCGCGCCAACTTCCCAGCCCACGCCGCCCGGGTCCCCGCGCTCCCCCGCCTCCCAGCCCCGGCGGCGCGCGGGGCAGAGCTTAGGTGGCGGCGGCGGCCGAGGTGGCGGCGAAAGCGGCGGCGGCGGCAGCGGCGGCGGCGGCCGCTGCAGCCTCACACTCGGTCGCCAAGCTGGAGGAGCGACGGAAGCCCGACCCCAGGAG
Seq A exon
GATGGAGGATGAAGCTGTCCTGGACAGAGGGGCTTCCTTCCTTAAACATGTGTGTGATGAAGAAGAAGTAGAAG
Seq C2 exon
GTCACCACACGATCTACATTGGGGTCCATGTGCCCAAGAGCTACCGGAGAAGGAGACGCCACAAGAGGAAGGCTGGGCACAAGGAAAAGAAGGAAAAGGAGAGAATCTCCGAGAACTACTCCGACAAATCTGATGTGGAGAATGCGGATGAGTCCAGCAGCAGTATCCTCAAACCCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060961-'0-3,'0-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.127 C2=0.674
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGCAGAGCTTAGGTGG
R:
GTAGCTCTTGGGCACATGGAC
Band lengths:
178-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: