RnoEX0082829 @ rn6
Exon Skipping
Gene
ENSRNOG00000003134 | Slc4a4
Description
solute carrier family 4 member 4 [Source:RGD Symbol;Acc:68936]
Coordinates
chr14:20749845-20892774:-
Coord C1 exon
chr14:20892712-20892774
Coord A exon
chr14:20769491-20769564
Coord C2 exon
chr14:20749845-20750024
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTCTATTACTATAGGAT
3' ss Score
9.78
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATATCCACAGTCGTTTTGTGACCTCTTCTGGCTACAAACCTGAGCACAGATGCTGGACCTATT
Seq A exon
GATGGAGGATGAAGCTGTCCTGGACAGAGGGGCTTCCTTCCTTAAACATGTGTGTGACGAAGAAGAAGTAGAAG
Seq C2 exon
GTCACCACACGATCTACATTGGGGTCCATGTGCCCAAGAGCTACCGGAGAAGGAGACGCCATAAGAGAAAGGCTGGGCACAAGGAAAAGAAGGAGAAGGAAAGGATCTCTGAGAACTATTCCGACAAATCAGATGTGGAGAATGCGGACGAATCCAGCAGCAGCATCCTCAAGCCGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003134-'3-10,'3-9,13-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.052 C2=0.587
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACAAACCTGAGCACAGA
R:
GTCCGCATTCTCCACATCTGA
Band lengths:
183-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]