GgaEX1053587 @ galGal3
Exon Skipping
Gene
ENSGALG00000011604 | SLC4A4
Description
NA
Coordinates
chr4:51694048-51733835:+
Coord C1 exon
chr4:51694048-51694076
Coord A exon
chr4:51715393-51715466
Coord C2 exon
chr4:51733656-51733835
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTTATTACTATAGGAT
3' ss Score
9.69
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GAGGAGCGCCCCAAGCCCGAGCCCCGCAG
Seq A exon
GATGGAGGACGAGGCAGTACTGGATAGAGGGGCTTCCTTCCTTAAACATGTATGTGATGAAGAAGAAGTGGAAG
Seq C2 exon
GTCATCACACTGTTTACATTGGGGTCCACGTGCCGAAGAGCTACAGGAGAAGGCGGCGTCATAGGAGAAGACCTGGGCACAAAGAAAAGAAAGAAAAGGAGAAAATTTCTGAGAATTACTCTGACAAATCAGACGTAGAAAATGCTGATGAGACAAGCAGCAGCATCCTCAAACCACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011604-'0-2,'0-0,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.200 C2=0.705
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]