MmuEX6018662 @ mm10
Exon Skipping
Gene
ENSMUSG00000060961 | Slc4a4
Description
solute carrier family 4 (anion exchanger), member 4 [Source:MGI Symbol;Acc:MGI:1927555]
Coordinates
chr5:88886818-88954957:+
Coord C1 exon
chr5:88886818-88887324
Coord A exon
chr5:88934749-88934822
Coord C2 exon
chr5:88954778-88954957
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTCTATTACTATAGGAT
3' ss Score
9.78
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TTCGGCCGCCTAGCCCATCCCCGAGCCCGGCCTCGGCTGCAGCGTCGGTTCCCGGCAGCCACACAGAGAGCCGGGCGCACACGCGGGAACTGCGGGAGGCAGAGTAGAGCGGAGCCGCCCCGCCGCCGCCGTCCCCTCCCCGAGGCCAGCACCTCTGCTCCGCGTCGCCGATCCCTCCCCGCGGGGCCGACCCTCCCGCGGCCACCCTCGCCCCTCGGCCGCCTCCCCGACGCACAGTGCGCAGCCACCCACCCGGCGCCAAAGTTGCGACCGCTGCCCCGCGCGCTCTGCGACCGGCCGCGCCAACTTCCCAGCCCACGCCGCCCGGGTCCCCGCGCTCCCCCGCCTCCCAGCCCCGGCGGCGCGCGGGGCAGAGCTTAGGTGGCGGCGGCGGCCGAGGTGGCGGCGAAAGCGGCGGCGGCGGCAGCGGCGGCGGCGGCCGCTGCAGCCTCACACTCGGTCGCCAAGCTGGAGGAGCGACGGAAGCCCGACCCCAGGAG
Seq A exon
GATGGAGGATGAAGCTGTCCTGGACAGAGGGGCTTCCTTCCTTAAACATGTGTGTGATGAAGAAGAAGTAGAAG
Seq C2 exon
GTCACCACACGATCTACATTGGGGTCCATGTGCCCAAGAGCTACCGGAGAAGGAGACGCCACAAGAGGAAGGCTGGGCACAAGGAAAAGAAGGAAAAGGAGAGAATCTCCGAGAACTACTCCGACAAATCTGATGTGGAGAATGCGGATGAGTCCAGCAGCAGTATCCTCAAACCCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060961-'0-4,'0-3,11-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.125 C2=0.668
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGCAGAGCTTAGGTGG
R:
GTAGCTCTTGGGCACATGGAC
Band lengths:
178-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types