BtaEX6031670 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002348 | SLC4A4
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 4 (SLC4A4), mRNA. [Source:RefSeq mRNA;Acc:NM_174605]
Coordinates
chr6:88182303-88257932:+
Coord C1 exon
chr6:88182303-88182521
Coord A exon
chr6:88235022-88235095
Coord C2 exon
chr6:88257753-88257932
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTTATTACTATAGGAT
3' ss Score
9.69
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTCGCGCCGACAACTTCCCGCGGTTCGGCCCCGCCGCGCCCCGGGCCCGCGCCTCCCGGGATCCCGCGGGCTCCCGGTTTCCAGCCCCGGCGGCGCGCCGGGCAGCGTTTCGGAGGCGGCGGCAGCGGCGGTGGCAGCGAAGGCGGCGGCGGCAGCGGTTGCTGCAGCTCCACACTCAACCGCCAAACTGGACGAGCGACGGAAGCCGGACCCCAGGAG
Seq A exon
GATGGAGGATGAAGCTGTCCTGGACAGAGGGGCTTCCTTCCTTAAGCATGTGTGTGATGAAGAAGAAGTAGAAG
Seq C2 exon
GCCACCACACCATCTACATTGGGGTCCATGTGCCAAAGAGCTACCGGAGAAGGAGACGTCACAAGAGAAAGACAGGCCACCGAGAAAAGAAGGAAAAGGAGAGAATCTCTGAGAACTATTCTGACAAGTCAGATGTGGAGAACGCGGATGAGTCCAGCAGCAGCATCCTGAAGCCTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002348-'0-1,'0-0,6-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.120 C2=0.672
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAACTGGACGAGCGAC
R:
GCGTTCTCCACATCTGACTTGT
Band lengths:
183-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]