GgaEX7011570 @ galGal4
Exon Skipping
Gene
ENSGALG00000013515 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr22:2862442-2864738:-
Coord C1 exon
chr22:2864630-2864738
Coord A exon
chr22:2862789-2862882
Coord C2 exon
chr22:2862442-2862633
Length
94 bp
Sequences
Splice sites
3' ss Seq
GCCCTTGACTCCCCGTTCAGCTC
3' ss Score
7.06
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GAGCGGTTTCCTCCCGAGGCAGTCTGGGCTCCCGCACCCATCAGCACCCACTGCATCCCCACGCTGAGCACAGCCCCTCCAATTCCTGAGTGCTTCTGGAGAGGCAGAG
Seq A exon
CTCTCACCACACGGCAGGACCATGCTGGAGGATGAGGATGGGCTGAGCGAGCGGGGACTCAGCAGCTCGAGGAGGAGATACGATGATGAAGAAG
Seq C2 exon
ATTACCACTCCATCTACATCGGGGTGCCGGTGCCCCGGGGATACCGGAGGAAGCGGCGTCGGCGGCGATCCGCCTCCAGCCGGGACCGGACCAGCGAGAGCGAGCGGCACTACGAGCGGCAGGAGCGCTCCGACACCGACGACGGCGGCCACGGCTGCTACGAGAGCGGCAATGACAACGCCAGCAGGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013515-'3-2,'3-1,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.923
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCACAGCCCCTCCAATTC
R:
GCTCCTGCCGCTCGTAGT
Band lengths:
170-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]